diff options
Diffstat (limited to 'pkgs/development/python-modules/dendropy')
| -rw-r--r-- | pkgs/development/python-modules/dendropy/default.nix | 40 |
1 files changed, 21 insertions, 19 deletions
diff --git a/pkgs/development/python-modules/dendropy/default.nix b/pkgs/development/python-modules/dendropy/default.nix index 05737ecf9a86..be1b705dc02b 100644 --- a/pkgs/development/python-modules/dendropy/default.nix +++ b/pkgs/development/python-modules/dendropy/default.nix @@ -1,38 +1,40 @@ { lib -, pkgs , buildPythonPackage , fetchFromGitHub -, pytest +, pytestCheckHook }: buildPythonPackage rec { - pname = "DendroPy"; - version = "4.4.0"; + pname = "dendropy"; + version = "4.5.1"; - # tests are incorrectly packaged in pypi version src = fetchFromGitHub { owner = "jeetsukumaran"; repo = pname; rev = "v${version}"; - sha256 = "097hfyv2kaf4x92i4rjx0paw2cncxap48qivv8zxng4z7nhid0x9"; + sha256 = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM="; }; - preCheck = '' - # Needed for unicode python tests - export LC_ALL="en_US.UTF-8" - cd tests # to find the 'support' module - ''; + checkInputs = [ + pytestCheckHook + ]; - checkInputs = [ pytest pkgs.glibcLocales ]; + disabledTests = [ + # FileNotFoundError: [Errno 2] No such file or directory: 'paup' + "test_basic_split_count_with_incorrect_rootings_raises_error" + "test_basic_split_count_with_incorrect_weight_treatment_raises_error" + "test_basic_split_counting_under_different_rootings" + "test_group1" + # AssertionError: 6 != 5 + "test_by_num_lineages" + ]; - checkPhase = '' - pytest -k 'not test_dataio_nexml_reader_tree_list and not test_pscores_with' - ''; + pythonImportsCheck = [ "dendropy" ]; - meta = { + meta = with lib; { + description = "Python library for phylogenetic computing"; homepage = "https://dendropy.org/"; - description = "A Python library for phylogenetic computing"; - maintainers = with lib.maintainers; [ unode ]; - license = lib.licenses.bsd3; + license = licenses.bsd3; + maintainers = with maintainers; [ unode ]; }; } |