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{
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
setuptools,
setuptools-scm,
# dependencies
dask,
numpy,
scipy,
pandas,
pims,
# tests
pyarrow,
pytestCheckHook,
scikit-image,
}:
buildPythonPackage rec {
pname = "dask-image";
version = "2024.5.3";
pyproject = true;
src = fetchFromGitHub {
owner = "dask";
repo = "dask-image";
tag = "v${version}";
hash = "sha256-kXCAqJ2Zgo/2Khvo2YcK+n4oGM219GyQ2Hsq9re1Lac=";
};
postPatch = ''
substituteInPlace dask_image/ndinterp/__init__.py \
--replace-fail "out_bounds.ptp(axis=1)" "np.ptp(out_bounds, axis=1)"
'';
build-system = [
setuptools
setuptools-scm
];
dependencies = [
dask
numpy
scipy
pandas
pims
];
nativeCheckInputs = [
pyarrow
pytestCheckHook
scikit-image
];
pythonImportsCheck = [ "dask_image" ];
disabledTests = [
# The following tests are from 'tests/test_dask_image/test_ndmeasure/test_find_objects.py' and
# fail because of errors on numpy slices
# AttributeError: 'str' object has no attribute 'start'
"test_find_objects"
"test_3d_find_objects"
# AssertionError (comparing slices)
"test_find_objects_with_empty_chunks"
];
meta = {
description = "Distributed image processing";
homepage = "https://github.com/dask/dask-image";
changelog = "https://github.com/dask/dask-image/releases/tag/v${version}";
license = lib.licenses.bsdOriginal;
maintainers = with lib.maintainers; [ GaetanLepage ];
};
}
|
