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{
lib,
buildPythonPackage,
fetchFromGitHub,
setuptools,
formulaic,
frozendict,
click,
num2words,
numpy,
scipy,
pandas,
nibabel,
bids-validator,
sqlalchemy,
universal-pathlib,
pytestCheckHook,
versioneer,
}:
buildPythonPackage rec {
pname = "pybids";
version = "0.19.0";
pyproject = true;
src = fetchFromGitHub {
owner = "bids-standard";
repo = "pybids";
tag = version;
hash = "sha256-x1OlqfuRZvfWwOt+WTR8lAtOPWcrsymQyXPfiEj4lk4=";
};
postPatch = ''
substituteInPlace pyproject.toml \
--replace-fail 'dynamic = ["version"]' 'version = "${version}"'
'';
pythonRelaxDeps = [
"formulaic"
"sqlalchemy"
];
build-system = [
setuptools
versioneer
] ++ versioneer.optional-dependencies.toml;
dependencies = [
bids-validator
click
formulaic
frozendict
nibabel
num2words
numpy
pandas
scipy
sqlalchemy
universal-pathlib
];
pythonImportsCheck = [ "bids" ];
nativeCheckInputs = [ pytestCheckHook ];
disabledTestPaths = [
# Could not connect to the endpoint URL
"src/bids/layout/tests/test_remote_bids.py"
];
disabledTests = [
# Regression associated with formulaic >= 0.6.0
# (see https://github.com/bids-standard/pybids/issues/1000)
"test_split"
];
meta = {
description = "Python tools for querying and manipulating BIDS datasets";
homepage = "https://github.com/bids-standard/pybids";
changelog = "https://github.com/bids-standard/pybids/blob/${version}/CHANGELOG.rst";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ wegank ];
mainProgram = "pybids";
};
}
|
